If you have any problems, email me the data record and the corresponding tuning file. I can show you where it can be improved or improve it for you with my Tuner and email it back.
With the 103 and bigger motors such as your 107 there is a physical limitation to the throttle body and injectors. You cannot match the 45mm carbed 103 or 107 for that matter in the 5500 to 6500 area because of this limitation. For 99-01 EFI Screaming Eagle has an upgraded throttle body but is is the dual throat design that basically failed. Can't bend air at 90 degrees. The 02 and later use single throat design and there is not currently an HD approved upgrade but there will be in the future.
If all your riding is in the 2000-4500RPM area you will be fine and can use the SE Tuner fine. If you are over 5000 and larger than a 95 there will be problems feeding air and fuel to the motor.
The Tuner will help but not fix.