Although it is not ideal, you can run the pipes without the "tuner". But keep in mind the bike most likely won't run the greatest until you do tune it.
If you do this; keep in mind that your bike will then be trying to push out more air than it is bringing in. So you will most likely lose torque especially, and horsepower too.
Best thing you can do is just wait until you are ready to do the entire system. I know patience is a hard thing to manage but, it will be worth the wait in my opinion. I know you want to change the sound but when you twist that throttle open and the bike don't respond good, that can be very disappointing.
But again, yes, it can be done.