Rock,
My buddy in Union City, Pa. swears by Jamestown HD. Had his 2001 FLTCUi built up there when he purchased it, and just got finished have bottom end redone after 80,000 mi.

don't really know about indy shops though!
and yeah, i live in Va. now, but lived in Erie for 11 yrs. and got plenty of riding buds up that way!